PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G286700.1
Common NameB456_008G286700, LOC105762557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 252aa    MW: 28798.6 Da    PI: 4.4749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G286700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.7e-1374117451
                 AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 
                         kGVr ++ +g+++AeIrd +     + kr +lg+f+t++eAa  + + ++
  Gorai.008G286700.1  74 KGVRKRP-WGKFAAEIRDpF-----TkKRLWLGTFDTEKEAAVVYNKKKR 117
                         8******.**********66.....34**********9999988876665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.92472129IPR001471AP2/ERF domain
PRINTSPR003673.6E-77384IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1473119IPR016177DNA-binding domain
CDDcd000189.33E-2074113No hitNo description
SMARTSM003801.5E-1274126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-1974121IPR001471AP2/ERF domain
PfamPF008471.0E-674109IPR001471AP2/ERF domain
PRINTSPR003673.6E-795111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPAFEPKNQR LNSENSKISK KFRIKYTDPN ATDSSSEEEE ENQIVGIKRI VKEISWSTVV  60
LDNDFTSSSS MTAKGVRKRP WGKFAAEIRD PFTKKRLWLG TFDTEKEAAV VYNKKKREFQ  120
IMSAAAEDEL YCRRSPSSVL DVCVGKVEDE TDMKRHVVKK VVKESRIIEP CKRTIEEDEV  180
CVNAVWDDVG SVMELSWEPP PPLWDEELLG PCCLQDTVDY GLTLPENLPA IETDFVQDMA  240
WVDEFFNVES E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435767.10.0PREDICTED: ethylene-responsive transcription factor ERF117-like
TrEMBLA0A0D2Q3Q10.0A0A0D2Q3Q1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2072045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-20cytokinin response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]